U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DIR5 Disease resistance-responsive (dirigent-like protein) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842720, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DIR5
    Official Full Name
    Disease resistance-responsive (dirigent-like protein) family protein
    Primary source
    TAIR:AT1G64160
    Locus tag
    AT1G64160
    See related
    Araport:AT1G64160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtDIR5; dirigent protein 5; F22C12.8; F22C12_8
    Summary
    Encodes a dirigent protein involved in the synthesis of (-)pinoresinol. Dirigent proteins impart stereoselectivity on the phenoxy radical coupling reaction yielding optically active lignans from two molecules of coniferyl alcohol.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DIR5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (23813943..23814839)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Uncharacterized protein family (UPF0016) Neighboring gene cation/H+ exchanger 16 Neighboring gene intracellular protein transport protein USO1-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Opposite stereoselectivities of dirigent proteins in Arabidopsis and schizandra species. Kim KW, et al. J Biol Chem, 2012 Oct 5. PMID 22854967, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_105089.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables guiding stereospecific synthesis activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within (-)-pinoresinol biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Disease resistance-responsive (dirigent-like protein) family protein
    NP_176598.1
    • Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: petal, hypocotyl, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT4G23690.1); Has 792 Blast hits to 791 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 792; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23813943..23814839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105089.3 → NP_176598.1  Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176598.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SH66
      UniProtKB/TrEMBL
      A0A178WBH5, A0A5S9WTA0, A0A654EQY3
      Conserved Domains (1) summary
      pfam03018
      Location:36 → 178
      Dirigent; Dirigent-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SH66.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools