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    SSL3 strictosidine synthase-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837368, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SSL3
    Official Full Name
    strictosidine synthase-like 3
    Primary source
    TAIR:AT1G08470
    Locus tag
    AT1G08470
    See related
    Araport:AT1G08470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    strictosidine synthase-like 3; T27G7.16; T27G7_16
    Summary
    Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
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    Genomic context

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    See SSL3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2682058..2684171, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene histone deacetylase 8 Neighboring gene Plant-specific transcription factor YABBY family protein Neighboring gene succinate dehydrogenase subunit Neighboring gene chloroplastic NIFS-like cysteine desulfurase Neighboring gene early nodulin-like protein 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100720.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables strictosidine synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    strictosidine synthase-like 3
    NP_563818.1
    • strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2682058..2684171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100720.3 → NP_563818.1  strictosidine synthase-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563818.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VWF6, Q9SJE4
      UniProtKB/TrEMBL
      A0A178WK70, A0A5S9TBW3, A0A654E7W1
      Conserved Domains (2) summary
      COG3386
      Location:70 → 295
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:179 → 266
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VWF6.1

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