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    Target SNARE coiled-coil domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839780, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Target SNARE coiled-coil domain protein
    Primary source
    TAIR:AT1G29060
    Locus tag
    AT1G29060
    See related
    Araport:AT1G29060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28N24.23; F28N24_23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (10147605..10149780)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L34 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 38 Neighboring gene ncRNA Neighboring gene Ribosomal protein L34 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Qc-SNARE gene AtSFT12 is involved in salt and osmotic stress responses and Na(+) accumulation in vacuoles. Tarte VN, et al. Plant Cell Rep, 2015 Jul. PMID 25689889
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332834.1
    NM_102647.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vacuolar sequestering of sodium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in Golgi cis cisterna HDA PubMed 

    General protein information

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    Preferred Names
    Target SNARE coiled-coil domain protein
    NP_564319.1
    • Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT4G14600.1); Has 153 Blast hits to 153 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10147605..10149780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102647.5 → NP_564319.1  Target SNARE coiled-coil domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564319.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9S0, Q9LP36
      UniProtKB/TrEMBL
      A0A654EPG8, A0A654FP68, Q1H5G7
      Conserved Domains (1) summary
      cd15841
      Location:45 → 100
      SNARE_Qc; SNARE motif, subgroup Qc

    2. NM_001332834.1 → NP_001321073.1  Target SNARE coiled-coil domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APW7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9S0.1

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