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    Zinc finger, C3HC4 type (RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842621, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc finger, C3HC4 type (RING finger) family protein
    Primary source
    TAIR:AT1G63170
    Locus tag
    AT1G63170
    See related
    Araport:AT1G63170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M19.7; F16M19_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (23425352..23427408)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene replication factor C 2 Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 3 Neighboring gene Cystatin/monellin superfamily protein Neighboring gene Cystatin/monellin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104995.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger, C3HC4 type (RING finger) family protein
    NP_564810.1
    • Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 9547 Blast hits to 9526 proteins in 279 species: Archae - 0; Bacteria - 6; Metazoa - 2543; Fungi - 730; Plants - 5047; Viruses - 25; Other Eukaryotes - 1196 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23425352..23427408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104995.4 → NP_564810.1  Zinc finger, C3HC4 type (RING finger) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564810.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LDB8, Q93Z65, Q9CAM6
      UniProtKB/TrEMBL
      A0A5S9WRX5, A0A654EM50
      Conserved Domains (1) summary
      pfam13639
      Location:324 → 366
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LDB8.2

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