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    PYD4 PYRIMIDINE 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820034, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PYD4
    Official Full Name
    PYRIMIDINE 4
    Primary source
    TAIR:AT3G08860
    Locus tag
    AT3G08860
    See related
    Araport:AT3G08860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PYRIMIDINE 4
    Summary
    Encodes a protein that is predicted to have beta-alanine aminotransferase activity.
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    Genomic context

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    See PYD4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (2696199..2699420, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene D-alanine-D-alanine ligase family Neighboring gene Regulatory-associated protein of TOR 1 Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene plectin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A functional analysis of the pyrimidine catabolic pathway in Arabidopsis. Zrenner R, et al. New Phytol, 2009. PMID 19413687, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001337783.1
    NM_111720.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alanine-glyoxylate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to nitrogen levels IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PYRIMIDINE 4
    NP_187498.1
    • PYRIMIDINE 4 (PYD4); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; INVOLVED IN: cellular response to nitrogen levels; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine:glyoxylate aminotransferase 3 (TAIR:AT2G38400.1); Has 35951 Blast hits to 35930 proteins in 2736 species: Archae - 736; Bacteria - 23081; Metazoa - 661; Fungi - 840; Plants - 399; Viruses - 17; Other Eukaryotes - 10217 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2696199..2699420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111720.4 → NP_187498.1  PYRIMIDINE 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187498.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SR86
      UniProtKB/TrEMBL
      A0A178V7X5, A0A654F5A0, Q0WWF1
      Conserved Domains (1) summary
      COG0160
      Location:57 → 477
      GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]

    2. NM_001337783.1 → NP_001326563.1  PYRIMIDINE 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7X5, A0A1I9LPN6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR86.1

    Gene LinkOut

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