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    RmlC-like cupins superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819575, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RmlC-like cupins superfamily protein
    Primary source
    TAIR:AT3G04200
    Locus tag
    AT3G04200
    See related
    Araport:AT3G04200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6K12.18; T6K12_18
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (1103616..1104614, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene RmlC-like cupins superfamily protein Neighboring gene Disease resistance protein (TIR-NBS class) Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111291.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RmlC-like cupins superfamily protein
    NP_187070.1
    • RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: stem, male gametophyte, root, leaf; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G05950.1); Has 1512 Blast hits to 1510 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 40; Plants - 1456; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1103616..1104614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111291.4 → NP_187070.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187070.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8X6
      UniProtKB/TrEMBL
      A0A7G2EIW0
      Conserved Domains (1) summary
      pfam00190
      Location:65 → 216
      Cupin_1; Cupin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M8X6.1

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