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    hAT transposon superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820488, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hAT transposon superfamily protein
    Primary source
    TAIR:AT3G13020
    Locus tag
    AT3G13020
    See related
    Araport:AT3G13020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGH6.14
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (4166806..4168917, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ribonuclease PH45A Neighboring gene ubiquinone biosynthesis protein (Protein of unknown function, DUF547) Neighboring gene hAT transposon superfamily protein Neighboring gene hAT transposon superfamily protein Neighboring gene myb-like HTH transcriptional regulator family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hAT transposon superfamily protein
    NP_187908.1
    • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13030.3); Has 668 Blast hits to 634 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 657; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4166806..4168917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112139.2 → NP_187908.1  hAT transposon superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187908.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKF5, A0A384LHW0, A0A5S9XBU3, Q9LDK4
      Conserved Domains (3) summary
      pfam04937
      Location:161 → 313
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:530 → 598
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam16278
      Location:18 → 41
      zf-C2HE; C2HE / C2H2 / C2HC zinc-binding finger
    Nucleotide Protein
    Heading Accession and Version

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