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    target of trans acting-siR480/255 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841238, updated on 18-Sep-2024

    Summary

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    Official Full Name
    target of trans acting-siR480/255 protein
    Primary source
    TAIR:AT1G48180
    Locus tag
    AT1G48180
    See related
    Araport:AT1G48180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21D18.8; F21D18_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (17792343..17794460, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene signal recognition particle 19 kDa protein, putative / SRP19 Neighboring gene proteasome assembly chaperone Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    target of trans acting-siR480/255 protein
    NP_175252.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17792343..17794460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333307.1 → NP_001322776.1  target of trans acting-siR480/255 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUY9, A0A654EH90

    2. NM_001333306.1 → NP_001322777.1  target of trans acting-siR480/255 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL97, A0A654EH90, F4HWT6

    3. NM_001333308.1 → NP_001322775.1  target of trans acting-siR480/255 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUY9, A0A654EH90

    4. NM_103715.1 → NP_175252.1  target of trans acting-siR480/255 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175252.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL97, A0A654EH90, F4HWT6
    Nucleotide Protein
    Heading Accession and Version

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