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    AOP2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828102, updated on 11-Sep-2024

    Summary

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    Official Symbol
    AOP2
    Primary source
    TAIR:AT4G03060
    Locus tag
    AT4G03060
    See related
    Araport:AT4G03060
    Gene type
    miscRNA
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alkenyl hydroxalkyl producing 2; T4I9.6; T4I9_6
    Summary
    Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.
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    Genomic context

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    See AOP2 in Genome Data Viewer
    Location:
    chromosome: 4
    Sequence:
    Chromosome: 4; NC_003075.7 (1351688..1354096, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate-dependent dioxygenase Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene BRI1 suppressor 1 (BSU1)-like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis. Burow M, et al. Mol Plant, 2015 Aug. PMID 25758208
    2. The characterisation of AOP2: a gene associated with the biosynthesis of aliphatic alkenyl glucosinolates in Arabidopsis thaliana. Neal CS, et al. BMC Plant Biol, 2010 Aug 11. PMID 20699011, Free PMC Article
    3. Transcriptional landscapes of de novo root regeneration from detached Arabidopsis leaves revealed by time-lapse and single-cell RNA sequencing analyses. Liu W, et al. Plant Commun, 2022 Jul 11. PMID 35605192, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AOP2 is part of a regulatory feed-back loop linking glucosinolate biosynthesis and jasmonic acid signaling.
      Title: The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis.
    2. The expression of the AOP2 gene has been found to be influenced by light and is most highly expressed in the photosynthetic parts of the Arabidopsis plant
      Title: The characterisation of AOP2: a gene associated with the biosynthesis of aliphatic alkenyl glucosinolates in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    • pseudogene of 2-oxoglutarate-dependent dioxygenase
      AT4G03060.1
    • pseudogene of 2-oxoglutarate-dependent dioxygenase
      AT4G03060.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in root regeneration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

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