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    hemf2 Coproporphyrinogen III oxidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828029, updated on 18-Sep-2024

    Summary

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    Official Symbol
    hemf2
    Official Full Name
    Coproporphyrinogen III oxidase
    Primary source
    TAIR:AT4G03205
    Locus tag
    AT4G03205
    See related
    Araport:AT4G03205
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See hemf2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (1412785..1414902)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GRR1-like protein 1 Neighboring gene catalytics Neighboring gene xyloglucan endotransglucosylase/hydrolase 9 Neighboring gene Protein with RNI-like/FBD-like domain Neighboring gene G-type lectin S-receptor-like Serine/Threonine-kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_116557.4
    NM_116558.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables coproporphyrinogen oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in chlorophyll biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protoporphyrinogen IX biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Coproporphyrinogen III oxidase
    NP_567256.3
    • hemf2; FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT1G03475.1); Has 4262 Blast hits to 4261 proteins in 1217 species: Archae - 0; Bacteria - 2128; Metazoa - 108; Fungi - 155; Plants - 83; Viruses - 0; Other Eukaryotes - 1788 (source: NCBI BLink).
    NP_567257.2
    • hemf2; FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT1G03475.1); Has 4273 Blast hits to 4272 proteins in 1221 species: Archae - 0; Bacteria - 2132; Metazoa - 108; Fungi - 158; Plants - 83; Viruses - 0; Other Eukaryotes - 1792 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1412785..1414902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116557.4 → NP_567256.3  Coproporphyrinogen III oxidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567256.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JI66, Q710F7, Q93Z96
      UniProtKB/TrEMBL
      A0A7G2EVW0
      Conserved Domains (1) summary
      cl19362
      Location:83 → 233
      Coprogen_oxidas; Coproporphyrinogen III oxidase

    2. NM_116558.2 → NP_567257.2  Coproporphyrinogen III oxidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567257.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XPI8, A0A654FLF8
      Conserved Domains (1) summary
      cl19362
      Location:83 → 235
      Coprogen_oxidas; Coproporphyrinogen III oxidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93Z96.1

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