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    HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829047, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HAD superfamily, subfamily IIIB acid phosphatase
    Primary source
    TAIR:AT4G29260
    Locus tag
    AT4G29260
    See related
    Araport:AT4G29260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17A13.80; F17A13_80
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (14422152..14423603, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 75 Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene low-molecular-weight cysteine-rich 23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of an Arabidopsis phosphate starvation-induced secreted acid phosphatase as a vegetative storage protein. Sun L, et al. Plant Sci, 2018 Dec. PMID 30466593
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119070.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    HAD superfamily, subfamily IIIB acid phosphatase
    NP_194655.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29270.1); Has 713 Blast hits to 710 proteins in 181 species: Archae - 0; Bacteria - 300; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14422152..14423603 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119070.4 → NP_194655.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194655.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UY20, Q9M0F5
      Conserved Domains (1) summary
      pfam03767
      Location:44 → 255
      Acid_phosphat_B; HAD superfamily, subfamily IIIB (Acid phosphatase)
    Nucleotide Protein
    Heading Accession and Version

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