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    PPD5 PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831016, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPD5
    Official Full Name
    PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
    Primary source
    TAIR:AT5G11450
    Locus tag
    AT5G11450
    See related
    Araport:AT5G11450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15N18.40; F15N18_40; PsbP domain protein 5
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    Genomic context

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    See PPD5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (3654392..3656647)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene uncharacterized protein Neighboring gene CTC-interacting domain 5 Neighboring gene hypothetical protein (DUF581) Neighboring gene bromo-adjacent homology (BAH) domain-containing protein Neighboring gene tRNA-Phe

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developmental defects in mutants of the PsbP domain protein 5 in Arabidopsis thaliana. Roose JL, et al. PLoS One, 2011. PMID 22174848, Free PMC Article
    2. Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways. Hong Y, et al. Plant Physiol, 2020 Feb. PMID 31776182, Free PMC Article
    3. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    4. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    5. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways.
      Title: Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways.
    2. The developmental defects observed in the ppd5 mutants are related to a deficiency in strigolactone biosynthesis.[PPD5]
      Title: Developmental defects in mutants of the PsbP domain protein 5 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121183.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
    NP_196706.2
    • Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3654392..3656647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343192.1 → NP_001331121.1  PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9N5, A0A1P8BCY0, A0A384KVS7
      Conserved Domains (1) summary
      cl03356
      Location:114 → 297
      DcrB

    2. NM_121183.5 → NP_196706.2  PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196706.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P82715, Q8VY65
      Conserved Domains (1) summary
      cl03356
      Location:96 → 279
      DUF1795; Domain of unknown function (DUF1795)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P82715.3

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