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    Lipase class 3-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832490, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Lipase class 3-related protein
    Primary source
    TAIR:AT5G24230
    Locus tag
    AT5G24230
    See related
    Araport:AT5G24230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MOP9.4; MOP9_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (8228829..8230964)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Lipase class 3-related protein Neighboring gene phosphatidylinositol 4-kinase gamma-like protein Neighboring gene prolyl oligopeptidase family protein Neighboring gene Calcium-binding EF-hand family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343854.1
    NM_001343855.1
    NM_122329.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Lipase class 3-related protein
    NP_197811.2
    • Lipase class 3-related protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Lipase class 3-related protein (TAIR:AT5G24220.1); Has 233 Blast hits to 232 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 10; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8228829..8230964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122329.4 → NP_197811.2  Lipase class 3-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197811.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBQ0, A0A384KA07, A0A5S9Y6X1, Q8GW37
      Conserved Domains (2) summary
      cd00741
      Location:159 → 225
      Lipase; Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at ...
      cl21494
      Location:121 → 190
      Abhydrolase; alpha/beta hydrolases

    2. NM_001343854.1 → NP_001331133.1  Lipase class 3-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBQ0, A0A384KA07, A0A5S9Y6X1, Q8GW37
      Conserved Domains (2) summary
      cd00741
      Location:159 → 225
      Lipase; Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at ...
      cl21494
      Location:121 → 190
      Abhydrolase; alpha/beta hydrolases

    3. NM_001343855.1 → NP_001331132.1  Lipase class 3-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBQ0, A0A384KA07, A0A5S9Y6X1, Q8GW37
      Conserved Domains (2) summary
      cd00741
      Location:159 → 225
      Lipase; Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at ...
      cl21494
      Location:121 → 190
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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