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    DOG1 delay of germination 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834623, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DOG1
    Official Full Name
    delay of germination 1
    Primary source
    TAIR:AT5G45830
    Locus tag
    AT5G45830
    See related
    Araport:AT5G45830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDOG1; DELAY OF GERMINATION 1; GAAS5; germination ability after storage 5; GLUCOSE SENSING QTL 5; GSQ5; K15I22.3; K15I22_3
    Summary
    Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific.
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    Genomic context

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    See DOG1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (18589418..18591506, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 19 Neighboring gene CBL-interacting protein kinase 20 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene hypothetical protein (DUF688)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic basis of adaptation in Arabidopsis thaliana: local adaptation at the seed dormancy QTL DOG1. Kronholm I, et al. Evolution, 2012 Jul. PMID 22759302
    2. DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination. Graeber K, et al. Proc Natl Acad Sci U S A, 2014 Aug 26. PMID 25114251, Free PMC Article
    3. Seed dormancy cycling in Arabidopsis: chromatin remodelling and regulation of DOG1 in response to seasonal environmental signals. Footitt S, et al. Plant J, 2015 Feb. PMID 25439058, Free PMC Article
    4. Seed Dormancy in Arabidopsis Is Controlled by Alternative Polyadenylation of DOG1. Cyrek M, et al. Plant Physiol, 2016 Feb. PMID 26620523, Free PMC Article
    5. Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing. Nakabayashi K, et al. PLoS Genet, 2015 Dec. PMID 26684465, Free PMC Article

    See all (36) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Complex control of seed germination timing by ERF50 involves RGL2 antagonism and negative feedback regulation of DOG1.
      Title: Complex control of seed germination timing by ERF50 involves RGL2 antagonism and negative feedback regulation of DOG1.
    2. The Arabidopsis pre-mRNA 3' end processing related protein FIP1 promotes seed dormancy via the DOG1 and ABA pathways.
      Title: The Arabidopsis pre-mRNA 3' end processing related protein FIP1 promotes seed dormancy via the DOG1 and ABA pathways.
    3. Promoter-pervasive transcription causes RNA polymerase II pausing to boost DOG1 expression in response to salt.
      Title: Promoter-pervasive transcription causes RNA polymerase II pausing to boost DOG1 expression in response to salt.
    4. Ectopic expression of the Arabidopsis florigen gene FLOWERING LOCUS T in seeds enhances seed dormancy via the GA and DOG1 pathways.
      Title: Ectopic expression of the Arabidopsis florigen gene FLOWERING LOCUS T in seeds enhances seed dormancy via the GA and DOG1 pathways.
    5. The Evening Complex and the Chromatin-Remodeling Factor PICKLE Coordinately Control Seed Dormancy by Directly Repressing DOG1 in Arabidopsis.
      Title: The Evening Complex and the Chromatin-Remodeling Factor PICKLE Coordinately Control Seed Dormancy by Directly Repressing DOG1 in Arabidopsis.
    6. Trait analysis reveals DOG1 determines initial depth of seed dormancy, but not changes during dormancy cycling that result in seedling emergence timing.
      Title: Trait analysis reveals DOG1 determines initial depth of seed dormancy, but not changes during dormancy cycling that result in seedling emergence timing.
    7. Arabidopsis thaliana SEED DORMANCY 4-LIKE regulates dormancy and germination by mediating the gibberellin pathway.
      Title: Arabidopsis thaliana SEED DORMANCY 4-LIKE regulates dormancy and germination by mediating the gibberellin pathway.
    8. DOG1 control seed chilling responses and variation in seasonal life-history strategies.
      Title: Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana.
    9. the role of transcriptional and translational regulation during seed imbibition of the very dormant DELAY OF GERMINATION 1 (DOG1) near-isogenic line was investigated.
      Title: Combined transcriptome and translatome analyses reveal a role for tryptophan-dependent auxin biosynthesis in the control of DOG1-dependent seed dormancy.
    10. Data show that that ABA HYPERSENSITIVE GERMINATION1 (AHG1) interacts with DELAY OF GERMINATION1 (DOG1), which is a pivotal positive regulator in seed dormancy.
      Title: Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme.
    Submit: New GeneRIF Correction See all GeneRIFs (32)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344641.1
    NM_001344643.1
    NM_001344644.1
    NM_001344645.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within sugar mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    delay of germination 1
    NP_001318745.1
    • DELAY OF GERMINATION 1 (DOG1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18690.1); Has 412 Blast hits to 412 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 412; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18589418..18591506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123951.3 → NP_199395.2  delay of germination 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199395.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0SVK0, Q0WQP5, Q9FJ53
      UniProtKB/TrEMBL
      A0SVJ6, A0SVJ9
      Conserved Domains (1) summary
      pfam14144
      Location:25 → 107
      DOG1; Seed dormancy control

    2. NM_001344642.1 → NP_001330542.1  delay of germination 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDP9, A0A654G9A3

    3. NM_001344641.1 → NP_001318745.1  delay of germination 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE87, A0SVJ6, A0SVJ9

    4. NM_001344644.1 → NP_001330540.1  delay of germination 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB61, A0A5S9YDP9, A0A654G9A3

    5. NM_001344643.1 → NP_001330543.1  delay of germination 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB61, A0A5S9YDP9, A0A654G9A3

    6. NM_001344645.1 → NP_001330541.1  delay of germination 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDP9, A0A654G9A3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0SVK0.1

    Gene LinkOut

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