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    LOW protein: zinc finger CCCH domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835425, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LOW protein: zinc finger CCCH domain protein
    Primary source
    TAIR:AT5G53440
    Locus tag
    AT5G53440
    See related
    Araport:AT5G53440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYN8.5; MYN8_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (21683144..21688273, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene CCT motif family protein Neighboring gene SET domain group 29 Neighboring gene OBP3-responsive protein 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345056.1
    NM_124723.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOW protein: zinc finger CCCH domain protein
    NP_200156.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21683144..21688273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124723.2 → NP_200156.1  LOW protein: zinc finger CCCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200156.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GAT3, Q9LV05
      Conserved Domains (1) summary
      TIGR00927
      Location:43 → 314
      2A1904; K+-dependent Na+/Ca+ exchanger

    2. NM_001345056.1 → NP_001331244.1  LOW protein: zinc finger CCCH domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD90, A0A654GAT3
    Nucleotide Protein
    Heading Accession and Version

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