U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836468, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
    Primary source
    TAIR:AT5G63490
    Locus tag
    AT5G63490
    See related
    Araport:AT5G63490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MLE2.12; MLE2_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (25418594..25422466, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SAP domain-containing protein Neighboring gene nuclear factor Y, subunit C4 Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene gamma carbonic anhydrase like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001345594.1
    NM_125744.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
    NP_201154.1
    • CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT5G50530.1); Has 8040 Blast hits to 6478 proteins in 1504 species: Archae - 1004; Bacteria - 5599; Metazoa - 7; Fungi - 119; Plants - 199; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25418594..25422466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125744.3 → NP_201154.1  CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201154.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMA2, Q9FMV3
      UniProtKB/TrEMBL
      A0A178UEI5, A0A5S9YH64, A0A7G2FMI2
      Conserved Domains (3) summary
      cd17781
      Location:60 → 176
      CBS_pair_MUG70_1; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat1
      cd17782
      Location:229 → 329
      CBS_pair_MUG70_2; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat2
      cl02720
      Location:405 → 488
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...

    2. NM_001345594.1 → NP_001331166.1  CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMA2, Q9FMV3
      UniProtKB/TrEMBL
      A0A178UEI5, A0A5S9YH64, A0A7G2FMI2
      Conserved Domains (3) summary
      cd17781
      Location:60 → 176
      CBS_pair_MUG70_1; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat1
      cd17782
      Location:229 → 329
      CBS_pair_MUG70_2; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat2
      cl02720
      Location:405 → 488
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FMV3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools