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    BGAL16 beta-galactosidase 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844078, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BGAL16
    Official Full Name
    beta-galactosidase 16
    Primary source
    TAIR:AT1G77410
    Locus tag
    AT1G77410
    See related
    Araport:AT1G77410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    beta-galactosidase 16; F2P24.12; F2P24_12
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    Genomic context

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    See BGAL16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Sequence:
    Chromosome: 1; NC_003070.9 (29088657..29093264, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene extensin-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene 20S proteasome beta subunit C2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334780.1
    NM_001334781.1
    NM_106391.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta-galactosidase 16
    NP_177866.2
    • beta-galactosidase 16 (BGAL16); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 35 protein (TAIR:AT5G63800.1); Has 2516 Blast hits to 2225 proteins in 479 species: Archae - 17; Bacteria - 1086; Metazoa - 478; Fungi - 225; Plants - 619; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29088657..29093264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334779.1 → NP_001320598.1  beta-galactosidase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJQ6, A0A1P8ANA8

    2. NM_106391.2 → NP_177866.2  beta-galactosidase 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177866.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GX69, Q9CAR2, Q9FVW7
      UniProtKB/TrEMBL
      A0A178WJQ6
      Conserved Domains (4) summary
      PLN03059
      Location:1 → 815
      PLN03059; beta-galactosidase; Provisional
      pfam01301
      Location:31 → 336
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam02140
      Location:737 → 814
      Gal_Lectin; Galactose binding lectin domain
      pfam13364
      Location:442 → 540
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    3. NM_001334780.1 → NP_001320597.1  beta-galactosidase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJQ6, A0A1P8ANB0

    4. NM_001334781.1 → NP_001320596.1  beta-galactosidase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJQ6, A0A1P8ANA8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GX69.2

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