U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    integral membrane protein (Protein of unknown function DUF92, transmembrane) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832115, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    integral membrane protein (Protein of unknown function DUF92, transmembrane)
    Primary source
    TAIR:AT5G19930
    Locus tag
    AT5G19930
    See related
    Araport:AT5G19930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.80; F28I16_80
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (6737512..6739573, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SOH1 family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene tudor domain protein (DUF1767) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    NM_001203414.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    integral membrane protein (Protein of unknown function DUF92, transmembrane)
    NP_001190343.1
    • Protein of unknown function DUF92, transmembrane; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794).
    NP_568386.1
    • Protein of unknown function DUF92, transmembrane; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6737512..6739573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122000.4 → NP_568386.1  integral membrane protein (Protein of unknown function DUF92, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568386.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WP96, Q8LF53
      UniProtKB/TrEMBL
      A0A178UD88, A0A5S9Y603, A0A654G3A1, A0A7G2FDU9
      Conserved Domains (1) summary
      pfam01940
      Location:14 → 277
      DUF92; Integral membrane protein DUF92

    2. NM_001203414.2 → NP_001190343.1  integral membrane protein (Protein of unknown function DUF92, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190343.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WP96, Q8LF53
      UniProtKB/TrEMBL
      A0A178UD88, A0A5S9Y603, A0A654G3A1, A0A7G2FDU9
      Conserved Domains (1) summary
      pfam01940
      Location:14 → 277
      DUF92; Integral membrane protein DUF92
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WP96.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools