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    DEAD/DEAH box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839681, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEAD/DEAH box RNA helicase family protein
    Primary source
    TAIR:AT1G27880
    Locus tag
    AT1G27880
    See related
    Araport:AT1G27880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28L5.4; F28L5_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    18
    Sequence:
    Chromosome: 1; NC_003070.9 (9708861..9714366)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF626) Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene RNA helicase family protein Neighboring gene plant U-box 45

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant. Bagherieh-Najjar MB, et al. Plant Mol Biol, 2003 May. PMID 12856935
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102553.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEAD/DEAH box RNA helicase family protein
    NP_174109.2
    • DEAD/DEAH box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9708861..9714366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332788.1 → NP_001320575.1  DEAD/DEAH box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6U2, A0A1P8AN95

    2. NM_102553.5 → NP_174109.2  DEAD/DEAH box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174109.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVW7, Q8W028, Q9C6N0
      UniProtKB/TrEMBL
      A0A178W6U2
      Conserved Domains (3) summary
      smart00382
      Location:284 → 412
      AAA; ATPases associated with a variety of cellular activities
      cd00079
      Location:484 → 589
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:271 → 413
      DEAD; DEAD/DEAH box helicase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WVW7.2

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