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    Sec23/Sec24 protein transport family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827055, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sec23/Sec24 protein transport family protein
    Primary source
    TAIR:AT4G14160
    Locus tag
    AT4G14160
    See related
    Araport:AT4G14160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3120W; FCAALL.112
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (8167351..8173417)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene phragmoplast-associated kinesin-related protein 1 Neighboring gene F-box family protein-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Endomembrane trafficking protein SEC24A regulates cell size patterning in Arabidopsis. Qu X, et al. Plant Physiol, 2014 Dec. PMID 25315606, Free PMC Article
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117493.4
    NM_179210.2
    NM_202815.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Sec23/Sec24 protein transport family protein
    NP_193152.2
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849541.2
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 1490 Blast hits to 1472 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 529; Fungi - 429; Plants - 324; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
    NP_974544.1
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8167351..8173417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117493.4 → NP_193152.2  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193152.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23275, Q8RW92, Q8VXX0
      UniProtKB/TrEMBL
      A0A178V0T7, A0A7G2EX44
      Conserved Domains (1) summary
      PLN00162
      Location:11 → 772
      PLN00162; transport protein sec23; Provisional

    2. NM_202815.1 → NP_974544.1  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974544.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JUM3
      Conserved Domains (4) summary
      cd01478
      Location:140 → 398
      Sec23-like; Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
      pfam04810
      Location:62 → 99
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:532 → 601
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:410 → 514
      Sec23_BS; Sec23/Sec24 beta-sandwich domain

    3. NM_179210.2 → NP_849541.2  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849541.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EX44, F4JUM1
      Conserved Domains (6) summary
      cd11287
      Location:621 → 741
      Sec23_C; C-terminal Actin depolymerization factor-homology domain of Sec23
      PLN00162
      Location:11 → 773
      PLN00162; transport protein sec23; Provisional
      cd01478
      Location:140 → 398
      Sec23-like; Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
      pfam04810
      Location:62 → 99
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:533 → 625
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:410 → 514
      Sec23_BS; Sec23/Sec24 beta-sandwich domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VXX0.1

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