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    LINC00431 long intergenic non-protein coding RNA 431 [ Homo sapiens (human) ]

    Gene ID: 104355135, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00431provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 431provided by HGNC
    Primary source
    HGNC:HGNC:42766
    See related
    AllianceGenome:HGNC:42766
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 3.5), ovary (RPKM 2.4) and 25 other tissues See more
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    Genomic context

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    See LINC00431 in Genome Data Viewer
    Location:
    13q34
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (110966027..110990602)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (110196291..110220875)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (111618374..111642949)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:111558775-111559276 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:111560595-111561212 Neighboring gene ankyrin repeat domain 10 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111566028-111566704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5522 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:111568056-111568730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111581847-111582346 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8019 Neighboring gene uncharacterized LOC105370364 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111608267-111609068 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:111609334-111610533 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:111617326-111618525 Neighboring gene poly(ADP-ribose) polymerase 1 pseudogene 1 Neighboring gene uncharacterized LOC124903213 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8020 Neighboring gene Sharpr-MPRA regulatory region 12287 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111704289-111704788 Neighboring gene NANOG hESC enhancer GRCh37_chr13:111716396-111716926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8023 Neighboring gene long intergenic non-protein coding RNA 368 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5526 Neighboring gene ARHGEF7 antisense RNA 2 Neighboring gene Rho guanine nucleotide exchange factor 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126378.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL442128, AW086183, BU630435

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      110966027..110990602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      110196291..110220875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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