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    Samd13 sterile alpha motif domain containing 13 [ Mus musculus (house mouse) ]

    Gene ID: 75015, updated on 9-Dec-2024

    Summary

    Official Symbol
    Samd13provided by MGI
    Official Full Name
    sterile alpha motif domain containing 13provided by MGI
    Primary source
    MGI:MGI:2686498
    See related
    Ensembl:ENSMUSG00000048652 Ensembl:ENSMUSG00000090202 AllianceGenome:MGI:2686498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1652; 1700013A07Rik; 1700095G21Rik; 4930483N21Rik
    Summary
    Orthologous to human SAMD13 (sterile alpha motif domain containing 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 13.7) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Samd13 in Genome Data Viewer
    Location:
    3 H2; 3 72.28 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (146350944..146391555, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (146645189..146685892, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11229 Neighboring gene ribosome production factor 1 homolog Neighboring gene deoxyribonuclease II beta Neighboring gene STARR-seq mESC enhancer starr_09227 Neighboring gene urate oxidase Neighboring gene STARR-seq mESC enhancer starr_09228 Neighboring gene predicted gene 16325 Neighboring gene predicted gene, 40169 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:146349571-146349754 Neighboring gene predicted gene, 36521 Neighboring gene high mobility group box 1 pseudogene Neighboring gene protein kinase, cAMP dependent, catalytic, beta Neighboring gene STARR-seq mESC enhancer starr_09230 Neighboring gene STARR-positive B cell enhancer ABC_E4605 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:146444299-146444452 Neighboring gene capping protein (actin filament) muscle Z-line, alpha 1 pseudogene

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    sterile alpha motif domain-containing protein 13; DnaJ domain-containing protein
    Names
    SAM domain-containing protein 13

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368725.1NP_001355654.1  sterile alpha motif domain-containing protein 13 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114618
      Consensus CDS
      CCDS89700.1
      UniProtKB/Swiss-Prot
      D3YUG0
      Related
      ENSMUSP00000118934.2, ENSMUST00000147113.2
      Conserved Domains (1) summary
      cd09583
      Location:2896
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    2. NM_001368726.1NP_001355655.1  sterile alpha motif domain-containing protein 13 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC114618
      Consensus CDS
      CCDS89699.1
      UniProtKB/TrEMBL
      A0A0G2JGB1
      Related
      ENSMUSP00000143496.2, ENSMUST00000197989.2
      Conserved Domains (1) summary
      cd09583
      Location:977
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    3. NM_029144.5NP_083420.2  DnaJ domain-containing protein isoform 3

      See identical proteins and their annotated locations for NP_083420.2

      Status: VALIDATED

      Source sequence(s)
      AC114618
      Consensus CDS
      CCDS38667.1
      UniProtKB/TrEMBL
      Q80ZP0, Q9D5A2
      Related
      ENSMUSP00000051453.6, ENSMUST00000049703.6
      Conserved Domains (2) summary
      COG0484
      Location:267
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:366
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      146350944..146391555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252862.2XP_030108722.1  sterile alpha motif domain-containing protein 13 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JGB1
      Conserved Domains (1) summary
      cd09583
      Location:977
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    2. XM_030252861.2XP_030108721.1  sterile alpha motif domain-containing protein 13 isoform X2

      UniProtKB/Swiss-Prot
      D3YUG0
      Related
      ENSMUSP00000119608.2, ENSMUST00000125965.8
      Conserved Domains (1) summary
      cd09583
      Location:2896
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    3. XM_011240263.3XP_011238565.1  sterile alpha motif domain-containing protein 13 isoform X2

      See identical proteins and their annotated locations for XP_011238565.1

      UniProtKB/Swiss-Prot
      D3YUG0
      Conserved Domains (1) summary
      cd09583
      Location:2896
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    4. XM_011240264.2XP_011238566.1  sterile alpha motif domain-containing protein 13 isoform X2

      See identical proteins and their annotated locations for XP_011238566.1

      UniProtKB/Swiss-Prot
      D3YUG0
      Conserved Domains (1) summary
      cd09583
      Location:2896
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    5. XM_006502225.5XP_006502288.1  DnaJ domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_006502288.1

      UniProtKB/TrEMBL
      G5E8V6, Q9D5A2
      Related
      ENSMUSP00000114745.2, ENSMUST00000149825.2
      Conserved Domains (1) summary
      pfam00226
      Location:366
      DnaJ; DnaJ domain