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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029246.2 RefSeqGene
- Range
-
5000..746018
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_002943.4 → NP_002934.1 nuclear receptor ROR-alpha isoform c
See identical proteins and their annotated locations for NP_002934.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3), also called RORalpha3, contains a different 5' sequence as compared to variant 1. As a result, variant 3 encodes isoform c, whose 91 N-terminal aa differ from the 66 N-terminal aa of isoform a encoded by variant 1.
- Source sequence(s)
-
AC009560, AC087385, KC877553
- Consensus CDS
-
CCDS10178.1
- UniProtKB/TrEMBL
- A0A0C4DFP5, B6ZGS4
- Related
- ENSP00000309753.3, ENST00000309157.8
- Conserved Domains (2) summary
-
- cd06939
Location:297 → 536
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:91 → 185
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
NM_134260.3 → NP_599022.1 nuclear receptor ROR-alpha isoform b
See identical proteins and their annotated locations for NP_599022.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2), also called RORalpha2, contains a different 5' sequence as compared to variant 1. As a result, variant 2 encodes isoform b, whose 99 N-terminal aa differ from the 66 N-terminal aa of isoform a encoded by variant 1.
- Source sequence(s)
-
AC009560, AC087385, AC107241, KC877553, KC877565
- Consensus CDS
-
CCDS10179.1
- UniProtKB/TrEMBL
-
B6ZGS4
- Related
- ENSP00000261523.5, ENST00000261523.9
- Conserved Domains (2) summary
-
- cd06939
Location:305 → 544
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:99 → 193
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
NM_134261.3 → NP_599023.1 nuclear receptor ROR-alpha isoform a
See identical proteins and their annotated locations for NP_599023.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), also called RORalpha1, utilizes a different 5' exon than the other variants and encodes isoform a.
- Source sequence(s)
-
AC009560, AC087385, AC107905, KC877553
- Consensus CDS
-
CCDS10177.1
- UniProtKB/Swiss-Prot
- P35397, P35398, P35399, P45445, Q495X4, Q96H83
- UniProtKB/TrEMBL
-
B6ZGS4
- Related
- ENSP00000335087.6, ENST00000335670.11
- Conserved Domains (2) summary
-
- cd06939
Location:272 → 511
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:66 → 160
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
NM_134262.3 → NP_599024.1 nuclear receptor ROR-alpha isoform d
See identical proteins and their annotated locations for NP_599024.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4), also called RZR-alpha, contains a different 5' sequence as compared to variant 1. As a result, variant 4 encodes isoform d, whose 11 N-terminal aa differ from the 66 N-terminal aa of isoform a encoded by variant 1.
- Source sequence(s)
-
AC087385, AC107241, KC877553
- Consensus CDS
-
CCDS45271.1
- UniProtKB/TrEMBL
- A0A0C4DG53, B6ZGS4
- Related
- ENSP00000402971.2, ENST00000449337.6
- Conserved Domains (2) summary
-
- cd06939
Location:217 → 456
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:11 → 105
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10 Reference GRCh38.p14 Primary Assembly
- Range
-
60488284..61229302 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047432928.1 → XP_047288884.1 nuclear receptor ROR-alpha isoform X4
-
XM_011521875.3 → XP_011520177.1 nuclear receptor ROR-alpha isoform X2
- UniProtKB/TrEMBL
-
B6ZGS4
- Conserved Domains (2) summary
-
- cd06939
Location:253 → 492
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:47 → 141
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_011521877.4 → XP_011520179.1 nuclear receptor ROR-alpha isoform X3
- UniProtKB/TrEMBL
-
B6ZGS4
- Conserved Domains (2) summary
-
- cd06939
Location:216 → 455
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:10 → 104
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_011521874.2 → XP_011520176.1 nuclear receptor ROR-alpha isoform X1
- UniProtKB/TrEMBL
-
B6ZGS4
- Conserved Domains (2) summary
-
- cd06939
Location:274 → 513
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:68 → 162
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_047432930.1 → XP_047288886.1 nuclear receptor ROR-alpha isoform X4
-
XM_047432929.1 → XP_047288885.1 nuclear receptor ROR-alpha isoform X4
-
XM_011521879.4 → XP_011520181.1 nuclear receptor ROR-alpha isoform X5
- Conserved Domains (1) summary
-
- cd06939
Location:125 → 364
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
Alternate T2T-CHM13v2.0
Genomic
-
NC_060939.1 Alternate T2T-CHM13v2.0
- Range
-
58291519..59032551 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054378582.1 → XP_054234557.1 nuclear receptor ROR-alpha isoform X4
-
XM_054378580.1 → XP_054234555.1 nuclear receptor ROR-alpha isoform X2
- UniProtKB/TrEMBL
-
B6ZGS4
-
XM_054378581.1 → XP_054234556.1 nuclear receptor ROR-alpha isoform X3
- UniProtKB/TrEMBL
-
B6ZGS4
-
XM_054378579.1 → XP_054234554.1 nuclear receptor ROR-alpha isoform X1
- UniProtKB/TrEMBL
-
B6ZGS4
-
XM_054378584.1 → XP_054234559.1 nuclear receptor ROR-alpha isoform X4
-
XM_054378583.1 → XP_054234558.1 nuclear receptor ROR-alpha isoform X4
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XM_054378585.1 → XP_054234560.1 nuclear receptor ROR-alpha isoform X5