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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001146160.1 → NP_001139632.1 deoxyribonuclease TATDN1 isoform b
See identical proteins and their annotated locations for NP_001139632.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has multiple differences compared to variant 4. These differences cause translation initiation at a downstream AUG and result in an isoform (b) that is shorter than isoform c.
- Source sequence(s)
-
AF212250, AV729364, AY071865, BC007066
- Consensus CDS
-
CCDS55273.1
- UniProtKB/Swiss-Prot
-
Q6P1N9
- Related
- ENSP00000428336.1, ENST00000519548.5
- Conserved Domains (1) summary
-
- cd01310
Location:1 → 247
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
NM_001317889.1 → NP_001304818.1 deoxyribonuclease TATDN1 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) encodes the longest isoform (c).
- Source sequence(s)
-
AV729364, BC007066, BU784642, BX332564
- UniProtKB/TrEMBL
-
E5RG17
- Related
- ENSP00000430274.1, ENST00000522810.5
- Conserved Domains (1) summary
-
- cd01310
Location:6 → 330
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
NM_001317890.1 → NP_001304819.1 deoxyribonuclease TATDN1 isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) has multiple differences compared to variant 4. These differences cause translation initiation at a downstream AUG and result in an isoform (d) that is shorter than isoform c.
- Source sequence(s)
-
AV729364, AY071865, BC007066, BG532054
- Consensus CDS
-
CCDS83323.1
- UniProtKB/TrEMBL
- A0A0D9SGD3, E5RGF2
- Related
- ENSP00000487380.1, ENST00000630259.1
- Conserved Domains (1) summary
-
- cd01310
Location:14 → 240
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
NM_001317891.1 → NP_001304820.1 deoxyribonuclease TATDN1 isoform e
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) has multiple differences compared to variant 4. These differences cause translation initiation at a downstream AUG and result in an isoform (e) that is shorter than isoform c.
- Source sequence(s)
-
AV729364, AY071865, BC007066, BG529611
- UniProtKB/Swiss-Prot
-
Q6P1N9
- Conserved Domains (1) summary
-
- cl00281
Location:1 → 149
- metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
-
NM_032026.4 → NP_114415.1 deoxyribonuclease TATDN1 isoform a
See identical proteins and their annotated locations for NP_114415.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) uses an alternate in-frame splice site and lacks an alternate exon in the 3' coding region compared to variant 4. The encoded isoform (a) is shorter than isoform c.
- Source sequence(s)
-
AF212250, AV729364, BC007066, BC064964
- Consensus CDS
-
CCDS6351.1
- UniProtKB/Swiss-Prot
- B2R5J0, Q6P1N9, Q8TD02, Q9BY40
- UniProtKB/TrEMBL
-
E5RG17
- Related
- ENSP00000276692.6, ENST00000276692.11
- Conserved Domains (1) summary
-
- cd01310
Location:6 → 294
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
RNA
-
NR_027427.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in an internal exon compared to variant 4. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC090198, AF212250, AV729364, BC007066
- Related
-
ENST00000523214.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
124488494..124539088 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011517331.4 → XP_011515633.1 deoxyribonuclease TATDN1 isoform X2
- UniProtKB/TrEMBL
-
E5RG17
- Conserved Domains (1) summary
-
- cd01310
Location:5 → 308
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
XM_024447293.2 → XP_024303061.1 deoxyribonuclease TATDN1 isoform X6
- UniProtKB/TrEMBL
-
E5RG17
- Conserved Domains (1) summary
-
- cd01310
Location:5 → 272
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
XM_006716666.5 → XP_006716729.1 deoxyribonuclease TATDN1 isoform X1
- UniProtKB/TrEMBL
-
E5RG17
- Conserved Domains (1) summary
-
- cd01310
Location:13 → 314
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
XM_017013895.3 → XP_016869384.1 deoxyribonuclease TATDN1 isoform X5
- UniProtKB/TrEMBL
-
E5RG17
-
XM_047422301.1 → XP_047278257.1 deoxyribonuclease TATDN1 isoform X4
- UniProtKB/TrEMBL
-
E5RG17
-
XM_006716669.4 → XP_006716732.1 deoxyribonuclease TATDN1 isoform X3
See identical proteins and their annotated locations for XP_006716732.1
- UniProtKB/TrEMBL
-
E5RG17
- Conserved Domains (1) summary
-
- cd01310
Location:21 → 297
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
XM_047422302.1 → XP_047278258.1 deoxyribonuclease TATDN1 isoform X9
-
XM_047422300.1 → XP_047278256.1 deoxyribonuclease TATDN1 isoform X3
- UniProtKB/TrEMBL
-
E5RG17
-
XM_017013897.3 → XP_016869386.1 deoxyribonuclease TATDN1 isoform X7
- Conserved Domains (1) summary
-
- cd01310
Location:21 → 261
- TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
-
XM_017013899.2 → XP_016869388.1 deoxyribonuclease TATDN1 isoform X8
- UniProtKB/TrEMBL
-
G5EA19
- Related
- ENSP00000476180.1, ENST00000605953.5
RNA
-
XR_007060756.1 RNA Sequence
- Related
-
ENST00000519776.5
-
XR_007060757.1 RNA Sequence
Reference GRCh38.p14 PATCHES
Genomic
-
NW_025791784.1 Reference GRCh38.p14 PATCHES
- Range
-
23444..74038 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333045.1 → XP_054189020.1 deoxyribonuclease TATDN1 isoform X2
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333050.1 → XP_054189025.1 deoxyribonuclease TATDN1 isoform X6
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333044.1 → XP_054189019.1 deoxyribonuclease TATDN1 isoform X1
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333049.1 → XP_054189024.1 deoxyribonuclease TATDN1 isoform X5
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333048.1 → XP_054189023.1 deoxyribonuclease TATDN1 isoform X4
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333047.1 → XP_054189022.1 deoxyribonuclease TATDN1 isoform X3
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333053.1 → XP_054189028.1 deoxyribonuclease TATDN1 isoform X9
-
XM_054333046.1 → XP_054189021.1 deoxyribonuclease TATDN1 isoform X3
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054333051.1 → XP_054189026.1 deoxyribonuclease TATDN1 isoform X7
-
XM_054333052.1 → XP_054189027.1 deoxyribonuclease TATDN1 isoform X8
- UniProtKB/TrEMBL
-
G5EA19
RNA
-
XR_008485817.1 RNA Sequence
-
XR_008485818.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
125621522..125672104 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054361342.1 → XP_054217317.1 deoxyribonuclease TATDN1 isoform X2
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361347.1 → XP_054217322.1 deoxyribonuclease TATDN1 isoform X6
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361341.1 → XP_054217316.1 deoxyribonuclease TATDN1 isoform X1
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361346.1 → XP_054217321.1 deoxyribonuclease TATDN1 isoform X5
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361345.1 → XP_054217320.1 deoxyribonuclease TATDN1 isoform X4
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361344.1 → XP_054217319.1 deoxyribonuclease TATDN1 isoform X3
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361350.1 → XP_054217325.1 deoxyribonuclease TATDN1 isoform X9
-
XM_054361343.1 → XP_054217318.1 deoxyribonuclease TATDN1 isoform X3
- UniProtKB/TrEMBL
-
E5RG17
-
XM_054361348.1 → XP_054217323.1 deoxyribonuclease TATDN1 isoform X7
-
XM_054361349.1 → XP_054217324.1 deoxyribonuclease TATDN1 isoform X8
- UniProtKB/TrEMBL
-
G5EA19
RNA
-
XR_008487883.1 RNA Sequence
-
XR_008487884.1 RNA Sequence