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    CFLAR-AS1 CFLAR antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 65072, updated on 17-Sep-2024

    Summary

    Official Symbol
    CFLAR-AS1provided by HGNC
    Official Full Name
    CFLAR antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:14437
    See related
    Ensembl:ENSG00000226312 AllianceGenome:HGNC:14437
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ALS2CR10
    Expression
    Ubiquitous expression in appendix (RPKM 5.2), fat (RPKM 5.2) and 25 other tissues See more
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    Genomic context

    See CFLAR-AS1 in Genome Data Viewer
    Location:
    2q33.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (201140289..201157792, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (201623732..201641233, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (202005012..202022515, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373836 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16975 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:201983171-201983674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12230 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:201988912-201989135 Neighboring gene NANOG hESC enhancer GRCh37_chr2:201989404-201989905 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:201990328-201990574 Neighboring gene CASP8 and FADD like apoptosis regulator Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16978 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:202002357-202003313 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:202003314-202004270 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:202004271-202005227 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 10 Neighboring gene RNA, U7 small nuclear 45 pseudogene Neighboring gene Sharpr-MPRA regulatory region 10379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:202014382-202015067 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:202015298-202016497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16980 Neighboring gene RPL38 pseudogene 5 Neighboring gene caspase 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16981 Neighboring gene MT-ND5 pseudogene 25

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • CFLAR antisense RNA 1 (non-protein coding)
    • amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040030.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB053312
      Related
      ENST00000415011.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      201140289..201157792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      201623732..201641233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)