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    Gpatch2l G patch domain containing 2-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314325, updated on 27-Nov-2024

    Summary

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    Symbol
    Gpatch2lprovided by RGD
    Full Name
    G patch domain containing 2-likeprovided by RGD
    Primary source
    RGD:1308907
    See related
    EnsemblRapid:ENSRNOG00000010227 AllianceGenome:RGD:1308907
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308907
    Summary
    Predicted to be active in nucleus. Orthologous to human GPATCH2L (G-patch domain containing 2 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 77.1), Thymus (RPKM 61.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gpatch2l in Genome Data Viewer
    Location:
    6q31
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (111614344..111666603)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (105883383..105935644)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (110093767..110228943)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 3 Neighboring gene intraflagellar transport 43 Neighboring gene uncharacterized LOC134479452 Neighboring gene estrogen-related receptor beta Neighboring gene uncharacterized LOC120103580

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G patch domain-containing protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134559.2 → NP_001128031.1  G patch domain-containing protein 2-like

      See identical proteins and their annotated locations for NP_001128031.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A8I6A8X2, A6JE58, D3ZUP4
      Related
      ENSRNOP00000084168.2, ENSRNOT00000114075.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      111614344..111666603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008764794.3 → XP_008763016.1  G patch domain-containing protein 2-like isoform X3

      UniProtKB/TrEMBL
      A0A8I5ZR09, A0A8I6A8X2
      Related
      ENSRNOP00000080573.1, ENSRNOT00000119252.2

    2. XM_039112311.2 → XP_038968239.1  G patch domain-containing protein 2-like isoform X4

      UniProtKB/TrEMBL
      A0A8I6A8X2

    3. XM_063261943.1 → XP_063118013.1  G patch domain-containing protein 2-like isoform X6

    4. XM_039112310.2 → XP_038968238.1  G patch domain-containing protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZWN4, A6JE59
      Related
      ENSRNOP00000111852.1, ENSRNOT00000167125.1

    5. XM_039112312.2 → XP_038968240.1  G patch domain-containing protein 2-like isoform X5

      UniProtKB/TrEMBL
      A0A8I6A8X2

    6. XM_063261944.1 → XP_063118014.1  G patch domain-containing protein 2-like isoform X7

    7. XM_039112309.1 → XP_038968237.1  G patch domain-containing protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8I6A8X2, A6JE58, D3ZUP4

    RNA

    1. XR_001838169.3 RNA Sequence

    2. XR_005505526.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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