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    Srrm3 serine/arginine repetitive matrix 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685890, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Srrm3provided by RGD
    Official Full Name
    serine/arginine repetitive matrix 3provided by RGD
    Primary source
    RGD:1587868
    See related
    EnsemblRapid:ENSRNOG00000001439 AllianceGenome:RGD:1587868
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307391
    Summary
    Predicted to enable mRNA binding activity. Predicted to be located in nucleus. Orthologous to human SRRM3 (serine/arginine repetitive matrix 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 59.8), Adrenal (RPKM 7.5) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Srrm3 in Genome Data Viewer
    Location:
    12q12
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (26445718..26515185, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (20808878..20878557, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (23855400..23925793, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S11, pseudogene 6 Neighboring gene heat shock protein family B (small) member 1 Neighboring gene uncharacterized LOC108352435 Neighboring gene malate dehydrogenase 2 Neighboring gene serine/threonine/tyrosine interacting-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine/arginine repetitive matrix protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277394.2 → NP_001264323.2  serine/arginine repetitive matrix protein 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      D3ZQH1
      Related
      ENSRNOP00000001957.7, ENSRNOT00000001957.9
      Conserved Domains (2) summary
      pfam15230
      Location:527 → 579
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
      cd21376
      Location:34 → 101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      26445718..26515185 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089750.2 → XP_038945678.1  serine/arginine repetitive matrix protein 3 isoform X1

      Conserved Domains (2) summary
      pfam15230
      Location:527 → 572
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
      cd21376
      Location:34 → 101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

    2. XM_063271657.1 → XP_063127727.1  serine/arginine repetitive matrix protein 3 isoform X2

    3. XM_039089753.2 → XP_038945681.1  serine/arginine repetitive matrix protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A8I6A836, A6J0A5
      Conserved Domains (1) summary
      cd21376
      Location:34 → 101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

    4. XM_039089752.2 → XP_038945680.1  serine/arginine repetitive matrix protein 3 isoform X3

      UniProtKB/TrEMBL
      A6J0A5
      Conserved Domains (1) summary
      cd21376
      Location:34 → 101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

    RNA

    1. XR_005491670.2 RNA Sequence

    2. XR_005491671.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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