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    Svs6 seminal vesicle secretory protein 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362267, updated on 9-Dec-2024

    Summary

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    Symbol
    Svs6provided by RGD
    Full Name
    seminal vesicle secretory protein 6provided by RGD
    Primary source
    RGD:1311054
    See related
    EnsemblRapid:ENSRNOG00000026346 AllianceGenome:RGD:1311054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Svp6
    Summary
    Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Svs6 in Genome Data Viewer
    Location:
    3q42
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (173391856..173399363)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (152978315..152979986)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (160695888..160697559)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486476 Neighboring gene seminal vesicle secretory protein 4 Neighboring gene seminal vesicle secretory protein 3A Neighboring gene seminal vesicle secretory protein 5 Neighboring gene antileukoproteinase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Structure of the androgen dependent SVS VI protein as derived from cDNA. Schifman AL, et al. Mol Cell Endocrinol, 1988 Sep. PMID 2848738
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    seminal vesicle secretory protein 6
    Names
    seminal vesicle secretion 6
    seminal vesicle secretory protein VI

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102403.1 → NP_001095873.1  seminal vesicle secretory protein 6 precursor

      See identical proteins and their annotated locations for NP_001095873.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474005
      UniProtKB/TrEMBL
      A6JX73, D3ZJA4
      Related
      ENSRNOP00000018510.5, ENSRNOT00000018510.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      173391856..173399363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284214.1 → XP_063140284.1  seminal vesicle secretory protein 6 isoform X1

    2. XM_063284215.1 → XP_063140285.1  seminal vesicle secretory protein 6 isoform X1

    3. XM_063284216.1 → XP_063140286.1  seminal vesicle secretory protein 6 isoform X2

    4. XM_063284217.1 → XP_063140287.1  seminal vesicle secretory protein 6 isoform X2

      UniProtKB/TrEMBL
      A6JX73, D3ZJA4
    Nucleotide Protein Strain
    Heading Accession and Version

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