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    SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815977, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB/MDM2 domain superfamily protein
    Primary source
    TAIR:AT2G14880
    Locus tag
    AT2G14880
    See related
    Araport:AT2G14880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26I20.4; T26I20_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (6393310..6395000, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene arabinogalactan protein 9 Neighboring gene Gibberellin-regulated family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001335441.1
    NM_001335442.1
    NM_127052.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    SWIB/MDM2 domain superfamily protein
    NP_565366.1
    • SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT4G34290.1); Has 1208 Blast hits to 1119 proteins in 254 species: Archae - 0; Bacteria - 214; Metazoa - 140; Fungi - 207; Plants - 389; Viruses - 11; Other Eukaryotes - 247 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      6393310..6395000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127052.3 → NP_565366.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565366.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WY68, A0A7G2E6E6, O82326, Q8RXG0
      Conserved Domains (1) summary
      pfam02201
      Location:67 → 140
      SWIB; SWIB/MDM2 domain

    2. NM_001335442.1 → NP_001324273.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZN6

    3. NM_001335441.1 → NP_001324272.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZN6
    Nucleotide Protein
    Heading Accession and Version

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