U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816321, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein
    Primary source
    TAIR:AT2G18090
    Locus tag
    AT2G18090
    See related
    Araport:AT2G18090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27K22.4; T27K22_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (7864175..7867820)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Serine carboxypeptidase S28 family protein Neighboring gene ncRNA Neighboring gene transmembrane/coiled-coil protein (DUF726) Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_179640.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein
    NP_849971.1
    • PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), GYF (InterPro:IPR003169), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 1270 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 166; Metazoa - 513; Fungi - 60; Plants - 433; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7864175..7867820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335581.1 → NP_001325275.1  PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2P9, A0A7G2E743

    2. NM_179640.2 → NP_849971.1  PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849971.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WYY1, A0A654ETU5, Q94JX1
      Conserved Domains (3) summary
      smart00444
      Location:457 → 512
      GYF; Contains conserved Gly-Tyr-Phe residues
      cd15568
      Location:81 → 126
      PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      pfam02201
      Location:299 → 370
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.