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    SR30 SERINE-ARGININE PROTEIN 30 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837433, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SR30
    Official Full Name
    SERINE-ARGININE PROTEIN 30
    Primary source
    TAIR:AT1G09140
    Locus tag
    AT1G09140
    See related
    Araport:AT1G09140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    At-SR30; ATSRP30; ATSRP30.1; ATSRP30.2; SERINE-ARGININE PROTEIN 30; Serine/Arginine-Rich Protein Splicing Factor 30; T12M4.19; T12M4_19
    Summary
    Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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    Genomic context

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    See SR30 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (2942538..2945976, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Glu Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein Neighboring gene phloem protein 2-B15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Subcellular Compartmentation of Alternatively Spliced Transcripts Defines SERINE/ARGININE-RICH PROTEIN30 Expression. Hartmann L, et al. Plant Physiol, 2018 Apr. PMID 29496883, Free PMC Article
    2. Subcellular and subnuclear distribution of high-light responsive serine/arginine-rich proteins, atSR45a and atSR30, in Arabidopsis thaliana. Mori T, et al. Biosci Biotechnol Biochem, 2012. PMID 23132568
    3. Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress. Tanabe N, et al. Plant Cell Physiol, 2007 Jul. PMID 17556373
    4. Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing. Lorkovic ZJ, et al. J Biol Chem, 2004 Aug 6. PMID 15166240
    5. Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei. Lorković ZJ, et al. Exp Cell Res, 2008 Oct 15. PMID 18674533

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Constitutive expression of serine-arginine-rich splicing protein isoforms SR30.1 and SR30.2 fused to fluorescent proteins showed their identical subcellular localization in the nucleoplasm and nuclear speckles.
      Title: Subcellular Compartmentation of Alternatively Spliced Transcripts Defines SERINE/ARGININE-RICH PROTEIN30 Expression.
    2. Subcellular and subnuclear distribution of atSR45a and atSR30
      Title: Subcellular and subnuclear distribution of high-light responsive serine/arginine-rich proteins, atSR45a and atSR30, in Arabidopsis thaliana.
    3. Expression of atSR45a and atSR30 might be regulated by several stressful conditions. [SR30]
      Title: Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331804.1
    NM_100783.6
    NM_148447.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SERINE-ARGININE PROTEIN 30
    NP_172386.3
    • SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0; Bacteria - 274; Metazoa - 6368; Fungi - 1180; Plants - 1529; Viruses - 86; Other Eukaryotes - 1110 (source: NCBI BLink).
    NP_683288.2
    • SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2942538..2945976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100783.6 → NP_172386.3  SERINE-ARGININE PROTEIN 30 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172386.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q949S8, Q9XFR5, Q9XFR6
      UniProtKB/TrEMBL
      A0A178WN40
      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:109 → 184
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    2. NM_148447.4 → NP_683288.2  SERINE-ARGININE PROTEIN 30 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683288.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN91
      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:109 → 184
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    3. NM_001331804.1 → NP_001320500.1  SERINE-ARGININE PROTEIN 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN11, O80496
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XFR5.1

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