U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nucleic acid binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839946, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    nucleic acid binding protein
    Primary source
    TAIR:AT1G30660
    Locus tag
    AT1G30660
    See related
    Araport:AT1G30660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5I8.11; T5I8_11
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (10876724..10879143)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase family protein Neighboring gene WRKY DNA-binding protein 14 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene toprim domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 5'-3' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nucleic acid binding protein
    NP_174354.4
    • nucleic acid binding;nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: DNA modification, DNA metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: toprim domain-containing protein (TAIR:AT1G30680.1); Has 599 Blast hits to 599 proteins in 131 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 44; Other Eukaryotes - 315 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10876724..10879143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332919.1 → NP_001321585.1  nucleic acid binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN41, A0A1P8ARC1, A0A384KNZ7
      Conserved Domains (2) summary
      pfam13662
      Location:198 → 285
      Toprim_4; Toprim domain
      cl40740
      Location:112 → 323
      DnaG; DNA primase (bacterial type) [Replication, recombination and repair]

    2. NM_001332920.1 → NP_001321586.1  nucleic acid binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMZ8, A0A1P8ARD6, A0A384KRV1
      Conserved Domains (2) summary
      pfam13662
      Location:195 → 282
      Toprim_4; Toprim domain
      cl40740
      Location:109 → 320
      DnaG; DNA primase (bacterial type) [Replication, recombination and repair]

    3. NM_102803.4 → NP_174354.4  nucleic acid binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174354.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I6E6, Q9SA81
      Conserved Domains (1) summary
      pfam13662
      Location:205 → 294
      Toprim_4; Toprim domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I6E6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.