SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: SGNH hydrolase-type esterase superfamily protein
Primary source: TAIR:AT1G75880
Locus tag: AT1G75880
See related: Araport:AT1G75880
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T4O12.12; T4O12_12
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (28490443..28492578)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_106238.4

Supported by ESTs:

NM_202420.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables acyltransferase activity	TAS Traceable Author Statement more info	PubMed
enables lipase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IMP Inferred from Mutant Phenotype more info	PubMed
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SGNH hydrolase-type esterase superfamily protein

NP_565120.1

SGNH hydrolase-type esterase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G75890.2); Has 3759 Blast hits to 3718 proteins in 343 species: Archae - 0; Bacteria - 575; Metazoa - 0; Fungi - 43; Plants - 3122; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

NP_974149.1

SGNH hydrolase-type esterase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G75890.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

28490443..28492578

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_202420.3 → NP_974149.1 SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974149.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W4S4

Conserved Domains (1) summary

cd01837
Location:51 → 369

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
NM_106238.4 → NP_565120.1 SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_565120.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q84K55, Q94CH8, Q9LQS6

UniProtKB/TrEMBL

A0A5S9WUQ3, A0A654EPB2

Conserved Domains (1) summary

cd01837
Location:51 → 370

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...