U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AHP2 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837893, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AHP2
    Official Full Name
    Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP)
    Primary source
    TAIR:AT1G13330
    Locus tag
    AT1G13330
    See related
    Araport:AT1G13330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis Hop2 homolog; HOMOLOGOUS-PAIRING PROTEIN 2; HOP2; T6J4.9; T6J4_9
    Summary
    Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AHP2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (4567935..4570598)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene protein phosphatase 2A subunit A3 Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. De Muyt A, et al. PLoS Genet, 2009 Sep. PMID 19763177, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_101204.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP)
    NP_172791.1
    • Arabidopsis Hop2 homolog (AHP2); CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 3022 Blast hits to 2708 proteins in 418 species: Archae - 82; Bacteria - 427; Metazoa - 1139; Fungi - 246; Plants - 98; Viruses - 21; Other Eukaryotes - 1009 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4567935..4570598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101204.3 → NP_172791.1  Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172791.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FX64
      UniProtKB/TrEMBL
      A0A178WCC4, A0A5S9U893
      Conserved Domains (3) summary
      pfam07106
      Location:8 → 69
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam18517
      Location:149 → 206
      LZ3wCH; Leucine zipper with capping helix domain
      cl27170
      Location:62 → 201
      DUF460; Protein of unknown function (DUF460)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FX64.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools