U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    structural constituent of ribosome [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838816, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    structural constituent of ribosome
    Primary source
    TAIR:AT1G22110
    Locus tag
    AT1G22110
    See related
    Araport:AT1G22110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2E2.18; F2E2_18
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (7800507..7804061, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Inositol-pentakisphosphate 2-kinase family protein Neighboring gene uncharacterized protein Neighboring gene AGAMOUS-like 104

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001332535.1
    NM_001332536.1
    NM_102061.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    structural constituent of ribosome
    NP_001319060.1
    • structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G77932.1); Has 4674 Blast hits to 1855 proteins in 271 species: Archae - 11; Bacteria - 643; Metazoa - 1218; Fungi - 438; Plants - 374; Viruses - 105; Other Eukaryotes - 1885 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7800507..7804061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332535.1 → NP_001319060.1  structural constituent of ribosome [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3M2, A0A654EMT3, Q9LM48
      Conserved Domains (1) summary
      pfam11250
      Location:102 → 159
      FAF; Fantastic Four meristem regulator

    2. NM_001332536.1 → NP_001320825.1  structural constituent of ribosome [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3M2, A0A654EMT3, Q9LM48
      Conserved Domains (1) summary
      pfam11250
      Location:102 → 159
      FAF; Fantastic Four meristem regulator

    3. NM_102061.4 → NP_173630.1  structural constituent of ribosome [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173630.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3M2, A0A654EMT3, Q9LM48
      Conserved Domains (1) summary
      pfam11250
      Location:102 → 159
      FAF; Fantastic Four meristem regulator
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools