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    autophagy-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829202, updated on 18-Sep-2024

    Summary

    Official Full Name
    autophagy-like protein
    Primary source
    TAIR:AT4G30790
    Locus tag
    AT4G30790
    See related
    Araport:AT4G30790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATG11; AUTOPHAGY-RELATED 11; T10C21.140; T10C21_140
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (14992396..14998649, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene ncRNA Neighboring gene Putative membrane lipoprotein Neighboring gene ATP-dependent DNA helicase Neighboring gene ncRNA Neighboring gene Nucleic acid-binding, OB-fold-like protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_119225.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in autophagosome assembly  
    involved_in autophagy PubMed 
    involved_in autophagy of mitochondrion PubMed 
    involved_in leaf senescence PubMed 
    Component Evidence Code Pubs
    located_in autophagosome PubMed 
    located_in nucleus  
    located_in plasmodesma PubMed 

    General protein information

    Preferred Names
    autophagy-like protein
    NP_194808.1
    • INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14992396..14998649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119225.3 → NP_194808.1  autophagy-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194808.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUG7
      UniProtKB/TrEMBL
      A0A5S9XZK9, A0A654FUE9
      Conserved Domains (3) summary
      TIGR02168
      Location:794 → 996
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam04108
      Location:217 → 487
      APG17; Autophagy protein Apg17
      pfam10377
      Location:980 → 1137
      ATG11; Autophagy-related protein 11
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