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    DPA4 AP2/B3-like transcriptional factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830512, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DPA4
    Official Full Name
    AP2/B3-like transcriptional factor family protein
    Primary source
    TAIR:AT5G06250
    Locus tag
    AT5G06250
    See related
    Araport:AT5G06250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4; MHF15.23; MHF15_23
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    Genomic context

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    See DPA4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (1891880..1894353, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TLD-domain containing nucleolar protein Neighboring gene hyaluronan mediated motility receptor-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SOD7/DPA4-GIF1 module coordinates organ growth and iron uptake in Arabidopsis. Zheng L, et al. Nat Plants, 2023 Aug. PMID 37550368
    2. De novo stem cell establishment in meristems requires repression of organ boundary cell fate. Nicolas A, et al. Plant Cell, 2022 Nov 29. PMID 36029254, Free PMC Article
    3. Transcription factors SOD7/NGAL2 and DPA4/NGAL3 act redundantly to regulate seed size by directly repressing KLU expression in Arabidopsis thaliana. Zhang Y, et al. Plant Cell, 2015 Mar. PMID 25783029, Free PMC Article
    4. Development-related PcG target in the apex 4 controls leaf margin architecture in Arabidopsis thaliana. Engelhorn J, et al. Development, 2012 Jul. PMID 22675210
    5. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The SOD7/DPA4-GIF1 module coordinates organ growth and iron uptake in Arabidopsis.
      Title: The SOD7/DPA4-GIF1 module coordinates organ growth and iron uptake in Arabidopsis.
    2. Findings identify SOD7 and DPA4 as negative regulators of seed size and define the genetic and molecular mechanisms of SOD7, DPA4, and KLU in seed size control. [DPA4]
      Title: Transcription factors SOD7/NGAL2 and DPA4/NGAL3 act redundantly to regulate seed size by directly repressing KLU expression in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125705.2
    NM_001342864.1
    NM_120707.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf shaping IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in meristem development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within meristem maintenance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AP2/B3-like transcriptional factor family protein
    NP_001119177.1
    • AP2/B3-like transcriptional factor family protein; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G11580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_196243.2
    • AP2/B3-like transcriptional factor family protein; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G11580.1); Has 1353 Blast hits to 1351 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1891880..1894353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342862.1 → NP_001331850.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BF49, A0A654FZ02
      Conserved Domains (1) summary
      pfam02362
      Location:46 → 158
      B3; B3 DNA binding domain

    2. NM_001342863.1 → NP_001331852.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UF66, A0A1P8BF34, A0A384L0Y1, A0A654FZ02
      Conserved Domains (1) summary
      pfam02362
      Location:46 → 158
      B3; B3 DNA binding domain

    3. NM_001125705.2 → NP_001119177.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119177.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H5L5, Q9FNI3
      UniProtKB/TrEMBL
      A0A654FZ02
      Conserved Domains (1) summary
      pfam02362
      Location:46 → 158
      B3; B3 DNA binding domain

    4. NM_001342864.1 → NP_001331851.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCA8, A0A1P8BF30, A0A384LF59, A0A654FZ02
      Conserved Domains (1) summary
      pfam02362
      Location:46 → 158
      B3; B3 DNA binding domain

    5. NM_120707.2 → NP_196243.2  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196243.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZ02
      Conserved Domains (1) summary
      pfam02362
      Location:46 → 158
      B3; B3 DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNI3.1

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