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    Sec14p-like phosphatidylinositol transfer family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834824, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sec14p-like phosphatidylinositol transfer family protein
    Primary source
    TAIR:AT5G47730
    Locus tag
    AT5G47730
    See related
    Araport:AT5G47730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCA23.5; MCA23_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (19334250..19337148, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein family Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene Thiolase family protein Neighboring gene ncRNA Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene D6 protein kinase like 2 Neighboring gene 2-phosphoglycolate phosphatase 2 Neighboring gene farnesyl diphosphate synthase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085261.2
    NM_001125919.1
    NM_001344744.1
    NM_124147.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sec14p-like phosphatidylinositol transfer family protein
    NP_001078730.1
    • Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G55840.1); Has 1425 Blast hits to 1425 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 295; Plants - 517; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
    NP_001119391.1
    • Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_199584.1
    • Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G55840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19334250..19337148 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124147.4 → NP_199584.1  Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA25, A0A384KYJ9, Q9FIK6
      Conserved Domains (2) summary
      smart00516
      Location:91 → 242
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      pfam03765
      Location:8 → 59
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    2. NM_001085261.2 → NP_001078730.1  Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078730.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQW6
      Conserved Domains (1) summary
      smart00516
      Location:36 → 187
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)

    3. NM_001125919.1 → NP_001119391.1  Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119391.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQW6
      Conserved Domains (1) summary
      smart00516
      Location:36 → 187
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)

    4. NM_001344744.1 → NP_001330995.1  Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA25, A0A384KYJ9, Q9FIK6
      Conserved Domains (2) summary
      smart00516
      Location:91 → 242
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      pfam03765
      Location:8 → 59
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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