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    HCF106 Bacterial sec-independent translocation protein mttA/Hcf106 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835320, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HCF106
    Official Full Name
    Bacterial sec-independent translocation protein mttA/Hcf106
    Primary source
    TAIR:AT5G52440
    Locus tag
    AT5G52440
    See related
    Araport:AT5G52440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    HIGH CHLOROPHYLL FLUORESCENCE 106; K24M7.19; K24M7_19
    Summary
    HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB
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    Genomic context

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    See HCF106 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (21286735..21288913)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene MATE efflux family protein Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene fibrillarin 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two Chloroplast Proteins Suppress Drought Resistance by Affecting ROS Production in Guard Cells. Wang Z, et al. Plant Physiol, 2016 Dec. PMID 27744298, Free PMC Article
    2. Tat subunit stoichiometry in Arabidopsis thaliana challenges the proposed function of TatA as the translocation pore. Jakob M, et al. Biochim Biophys Acta, 2009 Feb. PMID 18930082
    3. Component specificity for the thylakoidal Sec and Delta pH-dependent protein transport pathways. Mori H, et al. J Cell Biol, 1999 Jul 12. PMID 10402459, Free PMC Article
    4. Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis. Wang S, et al. PLoS Genet, 2016 May. PMID 27138552, Free PMC Article
    5. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results suggest that HCF106 and THF1 form a complex to modulate chloroplast function.
      Title: Two Chloroplast Proteins Suppress Drought Resistance by Affecting ROS Production in Guard Cells.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124623.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables proton motive force dependent protein transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of stomatal opening IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein import into chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein transport by the Tat complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of reactive oxygen species biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TAT protein transport complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Bacterial sec-independent translocation protein mttA/Hcf106
    NP_200057.1
    • HIGH CHLOROPHYLL FLUORESCENCE 106 (HCF106); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial sec-independent translocation protein mttA/Hcf106 (InterPro:IPR003369), Twin-arginine translocation protein TatA/E (InterPro:IPR006312); BEST Arabidopsis thaliana protein match is: Bacterial sec-independent translocation protein mttA/Hcf106 (TAIR:AT5G28750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21286735..21288913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124623.4 → NP_200057.1  Bacterial sec-independent translocation protein mttA/Hcf106 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200057.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XH75
      UniProtKB/TrEMBL
      A0A178UGR2, A0A5S9YDB1
      Conserved Domains (2) summary
      PRK00404
      Location:86 → 257
      tatB; Sec-independent protein translocase subunit TatB
      pfam02416
      Location:89 → 140
      MttA_Hcf106; mttA/Hcf106 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XH75.1

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