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    craniofacial development-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833136, updated on 18-Sep-2024

    Summary

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    Official Full Name
    craniofacial development-like protein
    Primary source
    TAIR:AT5G30490
    Locus tag
    AT5G30490
    See related
    Araport:AT5G30490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (11611787..11614536)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene ribosomal protein S1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085161.1
    NM_001344087.1
    NM_180570.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    craniofacial development-like protein
    NP_001318672.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    NP_850901.1
    • CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      11611787..11614536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180570.2 → NP_850901.1  craniofacial development-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850901.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URW9, A0A384LJL0, Q8GX81, Q8L8Q4
      Conserved Domains (1) summary
      pfam07572
      Location:156 → 226
      BCNT; Bucentaur or craniofacial development

    2. NM_001344087.1 → NP_001318672.1  craniofacial development-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URW9, A0A384LJL0, Q8GX81, Q8L8Q4
      Conserved Domains (1) summary
      pfam07572
      Location:156 → 226
      BCNT; Bucentaur or craniofacial development

    3. NM_001085161.1 → NP_001078630.1  craniofacial development-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078630.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URW9, A0A384LJL0, Q8GX81, Q8L8Q4
      Conserved Domains (1) summary
      pfam07572
      Location:156 → 226
      BCNT; Bucentaur or craniofacial development
    Nucleotide Protein
    Heading Accession and Version

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