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    Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824840, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative endonuclease or glycosyl hydrolase
    Primary source
    TAIR:AT3G56730
    Locus tag
    AT3G56730
    See related
    Araport:AT3G56730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (21013703..21015157)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sigma factor binding protein 1 Neighboring gene pre-mRNA-splicing factor Neighboring gene Ubiquitin-associated (UBA) protein Neighboring gene ncRNA Neighboring gene plant/protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115532.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative endonuclease or glycosyl hydrolase
    NP_001190108.1
    • Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62050.1).
    NP_191232.2
    • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62050.1); Has 138 Blast hits to 136 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21013703..21015157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339811.1 → NP_001325517.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLF8, A0A654FHB4, F4J0R7
      Conserved Domains (1) summary
      cd10910
      Location:18 → 127
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    2. NM_001339812.1 → NP_001325516.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLH0, A0A5S9XLF8
      Conserved Domains (1) summary
      cd10910
      Location:18 → 114
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    3. NM_001339813.1 → NP_001325519.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLH3

    4. NM_001203179.1 → NP_001190108.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190108.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLF8, A0A654FHB4, F4J0R7
      Conserved Domains (1) summary
      cd10910
      Location:18 → 127
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    5. NM_001339814.1 → NP_001325518.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLF8, Q9LET4
      Conserved Domains (1) summary
      cd10910
      Location:10 → 119
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    6. NM_115532.4 → NP_191232.2  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191232.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLF8, F4J0R8
      Conserved Domains (1) summary
      cd10910
      Location:12 → 121
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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