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    TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839901, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TCP24
    Official Full Name
    TEOSINTE BRANCHED 1, cycloidea, and PCF family 24
    Primary source
    TAIR:AT1G30210
    Locus tag
    AT1G30210
    See related
    Araport:AT1G30210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    and PCF family 24; ATTCP24; cycloidea; F12P21.11; F12P21_11; TEOSINTE BRANCHED 1
    Summary
    TCP family protein involved in heterochronic regulation of leaf differentiation.
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    Genomic context

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    See TCP24 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (10627185..10630630, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cotton fiber protein Neighboring gene F-box family protein Neighboring gene inositol transporter 2 Neighboring gene translation elongation factor EF1B/ribosomal protein S6 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutation of the conserved late element in geminivirus CP promoters abolishes Arabidopsis TCP24 transcription factor binding and decreases H3K27me3 levels on viral chromatin. Williams J, et al. PLoS Pathog, 2024 Jul. PMID 39024402, Free PMC Article
    2. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Zhu P, et al. Proc Natl Acad Sci U S A, 2016 Oct 18. PMID 27708161, Free PMC Article
    3. An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development. Qin G, et al. Plant Cell, 2005 Oct. PMID 16169896, Free PMC Article
    4. TCP transcription factors interact with AS2 in the repression of class-I KNOX genes in Arabidopsis thaliana. Li Z, et al. Plant J, 2012 Jul. PMID 22380849
    5. ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. Masuda HP, et al. EMBO J, 2008 Oct 22. PMID 18818695, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Mutation of the conserved late element in geminivirus CP promoters abolishes Arabidopsis TCP24 transcription factor binding and decreases H3K27me3 levels on viral chromatin.
      Title: Mutation of the conserved late element in geminivirus CP promoters abolishes Arabidopsis TCP24 transcription factor binding and decreases H3K27me3 levels on viral chromatin.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102760.3
    NM_179399.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in negative regulation of cell population proliferation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of development, heterochronic IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TEOSINTE BRANCHED 1, cycloidea, and PCF family 24
    NP_564351.1
    • ''TEOSINTE BRANCHED 1, cycloidea, and PCF family 24'' (TCP24); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (TAIR:AT4G18390.2); Has 2035 Blast hits to 1535 proteins in 329 species: Archae - 0; Bacteria - 5; Metazoa - 128; Fungi - 18; Plants - 1446; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).
    NP_849730.1
    • ''TEOSINTE BRANCHED 1, cycloidea, and PCF family 24'' (TCP24); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (TAIR:AT4G18390.2); Has 2035 Blast hits to 1535 proteins in 329 species: Archae - 0; Bacteria - 5; Metazoa - 128; Fungi - 18; Plants - 1446; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10627185..10630630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179399.3 → NP_849730.1  TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849730.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C758
      UniProtKB/TrEMBL
      A0A178W971, A0A5S9WG81
      Conserved Domains (1) summary
      PLN03105
      Location:1 → 324
      TCP24; transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

    2. NM_102760.3 → NP_564351.1  TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564351.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C758
      UniProtKB/TrEMBL
      A0A178W971, A0A5S9WG81
      Conserved Domains (1) summary
      PLN03105
      Location:1 → 324
      TCP24; transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C758.1

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