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    MYB116 myb domain protein 116 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839118, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB116
    Official Full Name
    myb domain protein 116
    Primary source
    TAIR:AT1G25340
    Locus tag
    AT1G25340
    See related
    Araport:AT1G25340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB116; F4F7.27; F4F7_27; myb domain protein 116
    Summary
    putative transcription factor (MYB116)
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    Genomic context

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    See MYB116 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8885020..8886777)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036014.2
    NM_001332675.1
    NM_102344.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 116
    NP_001031091.1
    • myb domain protein 116 (MYB116); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 62 (TAIR:AT1G68320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_564230.1
    • myb domain protein 116 (MYB116); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 62 (TAIR:AT1G68320.1); Has 8701 Blast hits to 8019 proteins in 468 species: Archae - 0; Bacteria - 0; Metazoa - 786; Fungi - 397; Plants - 5757; Viruses - 6; Other Eukaryotes - 1755 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8885020..8886777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102344.3 → NP_564230.1  myb domain protein 116 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564230.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKY4, A0ME92, Q94FU0
      Conserved Domains (1) summary
      PLN03091
      Location:19 → 133
      PLN03091; hypothetical protein; Provisional

    2. NM_001332675.1 → NP_001321760.1  myb domain protein 116 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARZ7, A0ME92

    3. NM_001036014.2 → NP_001031091.1  myb domain protein 116 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031091.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ENK5, A0ME92, Q9FRI3
      Conserved Domains (1) summary
      PLN03091
      Location:19 → 128
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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