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    Restriction endonuclease, type II-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843091, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Restriction endonuclease, type II-like superfamily protein
    Primary source
    TAIR:AT1G67660
    Locus tag
    AT1G67660
    See related
    Araport:AT1G67660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A21.19; F12A21_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (25363502..25365314)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene SRP72 RNA-binding domain-containing protein Neighboring gene uncharacterized protein Neighboring gene SRP72 RNA-binding domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084317.2
    NM_001198416.2
    NM_105434.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Restriction endonuclease, type II-like superfamily protein
    NP_001077786.1
    • Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Putative phage-type endonuclease (InterPro:IPR017482), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G13810.1); Has 523 Blast hits to 523 proteins in 110 species: Archae - 0; Bacteria - 146; Metazoa - 63; Fungi - 0; Plants - 69; Viruses - 30; Other Eukaryotes - 215 (source: NCBI BLink).
    NP_001185345.1
    • Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Putative phage-type endonuclease (InterPro:IPR017482), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G13810.1).
    NP_176934.2
    • Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Putative phage-type endonuclease (InterPro:IPR017482), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G13810.1); Has 531 Blast hits to 531 proteins in 112 species: Archae - 0; Bacteria - 154; Metazoa - 63; Fungi - 0; Plants - 69; Viruses - 30; Other Eukaryotes - 215 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25363502..25365314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105434.3 → NP_176934.2  Restriction endonuclease, type II-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176934.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQM0, Q8GW93
      Conserved Domains (1) summary
      cd22343
      Location:116 → 295
      PDDEXK_lambda_exonuclease-like; Uncharacterized nucleases similar to lambda phage exonuclease

    2. NM_001084317.2 → NP_001077786.1  Restriction endonuclease, type II-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077786.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ENG2, F4HTP8
      Conserved Domains (1) summary
      cd22343
      Location:66 → 245
      PDDEXK_lambda_exonuclease-like; Uncharacterized nucleases similar to lambda phage exonuclease

    3. NM_001198416.2 → NP_001185345.1  Restriction endonuclease, type II-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185345.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FXD2
      Conserved Domains (1) summary
      pfam09588
      Location:99 → 239
      YqaJ; YqaJ-like viral recombinase domain
    Nucleotide Protein
    Heading Accession and Version

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