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    DIAPH3-AS1 DIAPH3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100874195, updated on 10-Dec-2024

    Summary

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    Official Symbol
    DIAPH3-AS1provided by HGNC
    Official Full Name
    DIAPH3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:39915
    See related
    Ensembl:ENSG00000227528 AllianceGenome:HGNC:39915
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 3.4), placenta (RPKM 0.2) and 1 other tissue See more
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    Genomic context

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    See DIAPH3-AS1 in Genome Data Viewer
    Location:
    13q21.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (60012718..60044357)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (59232210..59263980)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (60586852..60618491)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984625 Neighboring gene RNA, U7 small nuclear 88 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr13:60247454-60247955 Neighboring gene diaphanous related formin 3 Neighboring gene Sharpr-MPRA regulatory region 8361 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:60367030-60367895 Neighboring gene RNA, 7SL, cytoplasmic 375, pseudogene Neighboring gene uncharacterized LOC105370227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7799 Neighboring gene Sharpr-MPRA regulatory region 11905 Neighboring gene DIAPH3 antisense RNA 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • DIAPH3 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046539.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the mid-region compared to variant 1.
      Source sequence(s)
      BX093461, BX398653
      Related
      ENST00000435636.6

    2. NR_051993.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) contains an alternate exon at the 5' end and lacks two internal exons compared to variant 1.
      Source sequence(s)
      AI685327, BC032915, BX093461
      Related
      ENST00000432995.1

    3. NR_051994.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate exon at the 5' end and lacks an internal exon in the mid-region compared to variant 1.
      Source sequence(s)
      BC032915, BX093461
      Related
      ENST00000422052.6

    4. NR_109838.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BX093461, BX398653
      Related
      ENST00000826398.1

    5. NR_109839.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) contains an alternate exon at the 5' end and differs at the 3' end compared to variant 1.
      Source sequence(s)
      AL390878, BC032915
      Related
      ENST00000826400.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      60012718..60044357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      59232210..59263980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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