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    Tektl1 tektin like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500800, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tektl1provided by RGD
    Official Full Name
    tektin like 1provided by RGD
    Primary source
    RGD:1594374
    See related
    EnsemblRapid:ENSRNOG00000007375 AllianceGenome:RGD:1594374
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ccdc105
    Summary
    Predicted to be involved in flagellated sperm motility. Predicted to be active in axonemal B tubule inner sheath and sperm flagellum. Orthologous to human TEKTL1 (tektin like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 57.3) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tektl1 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (11551549..11558258)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (10900449..10907673)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (13913929..13919420)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily C member 70 Neighboring gene solute carrier family 1 member 6 Neighboring gene uncharacterized LOC102549402 Neighboring gene caspase 14 Neighboring gene olfactory receptor family 1 subfamily I member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC116191

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in flagellated sperm motility ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    is_active_in axonemal B tubule inner sheath ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in axonemal B tubule inner sheath ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in sperm flagellum ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    tektin-like protein 1
    Names
    coiled-coil domain containing 105
    coiled-coil domain-containing protein 105

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025774.1NP_001020945.1  tektin-like protein 1

      See identical proteins and their annotated locations for NP_001020945.1

      Status: PROVISIONAL

      Source sequence(s)
      BC098035
      UniProtKB/Swiss-Prot
      Q4V7B5
      UniProtKB/TrEMBL
      A6K926
      Related
      ENSRNOP00000009833.4, ENSRNOT00000009833.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      11551549..11558258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079737.2XP_038935665.1  tektin-like protein 1 isoform X3

    2. XM_039079735.2XP_038935663.1  tektin-like protein 1 isoform X1

    3. XM_039079736.2XP_038935664.1  tektin-like protein 1 isoform X2