U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Acta2 actin alpha 2, smooth muscle [ Rattus norvegicus (Norway rat) ]

    Gene ID: 81633, updated on 9-Dec-2024

    Summary

    Official Symbol
    Acta2provided by RGD
    Official Full Name
    actin alpha 2, smooth muscleprovided by RGD
    Primary source
    RGD:621676
    See related
    EnsemblRapid:ENSRNOG00000058039 AllianceGenome:RGD:621676
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable protein kinase binding activity. Involved in several processes, including positive regulation of ERK1 and ERK2 cascade; positive regulation of hepatic stellate cell activation; and positive regulation of hepatic stellate cell contraction. Located in basement membrane and stress fiber. Biomarker of rheumatic heart disease. Human ortholog(s) of this gene implicated in Moyamoya disease and thoracic aortic aneurysm. Orthologous to human ACTA2 (actin alpha 2, smooth muscle). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Uterus (RPKM 1292.3), Spleen (RPKM 312.3) and 6 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Acta2 in Genome Data Viewer
    Location:
    1q52
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (241159723..241172503, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (231746527..231759307, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (252537614..252550394, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 22 Neighboring gene STAM binding protein-like 1 Neighboring gene death effector domain-containing, pseudogene 1 Neighboring gene U6 spliceosomal RNA Neighboring gene Fas cell surface death receptor

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cellular response to transforming growth factor beta stimulus IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in glomerular mesangial cell development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in glomerular mesangial cell development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in juxtaglomerular apparatus development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in mesenchyme migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in muscle contraction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of ERK1 and ERK2 cascade IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of hepatic stellate cell activation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of hepatic stellate cell contraction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of hepatic stellate cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of blood pressure IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of blood pressure ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to virus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to virus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in vascular associated smooth muscle contraction IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within vascular associated smooth muscle contraction ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in actin cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in actin cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in basement membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell body ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in filopodium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in lamellipodium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in motile cilium ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in smooth muscle contractile fiber IEA
    Inferred from Electronic Annotation
    more info
     
    located_in smooth muscle contractile fiber ISO
    Inferred from Sequence Orthology
    more info
     
    located_in stress fiber IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    actin, aortic smooth muscle
    Names
    actin, alpha 2, smooth muscle, aorta
    alpha-actin-2
    smooth muscle alpha-actin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_031004.2NP_112266.1  actin, aortic smooth muscle

      See identical proteins and their annotated locations for NP_112266.1

      Status: VALIDATED

      Source sequence(s)
      BI282383, BI287899, CB608976, DN934985
      UniProtKB/Swiss-Prot
      P62738, P70476
      UniProtKB/TrEMBL
      A0A0G2K4M6, B0BMT0
      Related
      ENSRNOP00000073101.2, ENSRNOT00000083468.3
      Conserved Domains (1) summary
      PTZ00281
      Location:3377
      PTZ00281; actin; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      241159723..241172503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)