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    WLIM1 GATA type zinc finger transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837558, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WLIM1
    Official Full Name
    GATA type zinc finger transcription factor family protein
    Primary source
    TAIR:AT1G10200
    Locus tag
    AT1G10200
    See related
    Araport:AT1G10200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtWLIM1; F14N23.8; F14N23_8
    Summary
    Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
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    Genomic context

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    See WLIM1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3346383..3348139, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NF-X-like 1 Neighboring gene LOW protein: exocyst complex component-like protein Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene mitogen-activated protein kinase 1 Neighboring gene ZCF37

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns and modes of regulation. Papuga J, et al. Plant Cell, 2010 Sep. PMID 20817848, Free PMC Article
    2. Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control. Pulido P, et al. Plant Cell, 2013 Oct. PMID 24104567, Free PMC Article
    3. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    4. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100894.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA type zinc finger transcription factor family protein
    NP_172491.1
    • WLIM1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 3462; Fungi - 43; Plants - 506; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3346383..3348139 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331891.1 → NP_001322158.1  GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT46
      Conserved Domains (2) summary
      cd09441
      Location:68 → 128
      LIM2_SF3; The second Lim domain of pollen specific protein SF3
      cl02475
      Location:3 → 26
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    2. NM_100894.4 → NP_172491.1  GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172491.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JX5, Q9SY62
      UniProtKB/TrEMBL
      A0A178W4R1, A0A5S9TKR8
      Conserved Domains (2) summary
      cd09440
      Location:6 → 68
      LIM1_SF3; The first Lim domain of pollen specific protein SF3
      cd09441
      Location:110 → 170
      LIM2_SF3; The second Lim domain of pollen specific protein SF3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94JX5.1

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