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    transmembrane protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817034, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF239)
    Primary source
    TAIR:AT2G24950
    Locus tag
    AT2G24950
    See related
    Araport:AT2G24950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27C12.13; F27C12_13
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (10613105..10615563)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene membrane-associated progesterone binding protein 2 Neighboring gene uncharacterized protein Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene spindle/kinetochore-associated protein Neighboring gene Proline-rich extensin-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_128053.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF239)
    NP_180067.1
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G15050.1); Has 643 Blast hits to 610 proteins in 23 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 632; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10613105..10615563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128053.1 → NP_180067.1  transmembrane protein, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180067.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SK38
      Conserved Domains (2) summary
      pfam03080
      Location:197 → 408
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:70 → 181
      DUF4409; Domain of unknown function (DUF4409)
    Nucleotide Protein
    Heading Accession and Version

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