RD2 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: RD2
Official Full Name: Adenine nucleotide alpha hydrolases-like superfamily protein
Primary source: TAIR:AT2G21620
Locus tag: AT2G21620
See related: Araport:AT2G21620
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F2G1.11; F2G1_11
Summary: Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.
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Genomic context

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See RD2 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 5

Sequence:: Chromosome: 2; NC_003071.7 (9248525..9250311)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_179684.4

Supported by ESTs:

NM_179685.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within response to desiccation	IEP Inferred from Expression Pattern more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in cytosol	HDA more info	PubMed
located_in plasma membrane	HDA more info	PubMed
located_in vacuole	HDA more info	PubMed

General protein information

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Preferred Names: Adenine nucleotide alpha hydrolases-like superfamily protein

NP_850015.1

RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1069 Blast hits to 1068 proteins in 194 species: Archae - 66; Bacteria - 229; Metazoa - 119; Fungi - 58; Plants - 583; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NP_850016.1

RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1098 Blast hits to 1097 proteins in 198 species: Archae - 70; Bacteria - 241; Metazoa - 121; Fungi - 60; Plants - 588; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

9248525..9250311

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_179684.4 → NP_850015.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850015.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VRN2, Q9SIJ8

Conserved Domains (1) summary

cd00293
Location:42 → 166

USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
NM_179685.2 → NP_850016.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850016.1

Status: REVIEWED

UniProtKB/TrEMBL

Q94II5

Conserved Domains (1) summary

cd00293
Location:42 → 172

USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...